Polio surveillance
Developed automated R workflows for WHO AFRO's weekly polio surveillance bulletin, integrating data across 47 Member States.
Automated polio surveillance reporting
Automated polio surveillance reporting at WHO AFRO
Overview
Polio surveillance across the WHO African Region draws on multiple data systems, requiring regular integration, cleaning and validation.
My contribution
At WHO AFRO, I developed an automated R pipeline producing a weekly surveillance bulletin of more than 60 pages, distributed to over 500 recipients. I also developed analytical tools with the Nigeria National Polio Emergency Operations Centre and supported their transfer to national teams. I wrote poliprep with Derrick Demeveng and contributed code to the US CDC packages sirfunctions and tidypolis.
Selected outputs
Automated surveillance pipeline, R packages and reproducible reporting workflows.
The bulletin and the Nigeria platform contain operational surveillance data and are not reproduced here.
